GenomQC
Public beta · Runs in your browser

From QC output
to a decision.

Load a MultiQC export. GenomQC classifies each RNA-seq sample as PASS, WARN or FAIL and explains the reason and next action.

No raw-data upload No installation Immediate result
Join the 10-Report Challenge →

01 · DATA INPUT

Analyze your MultiQC export

LOCAL

Analysis happens entirely in this browser tab.

02 · DECISION REPORT

Run decision summary

ILLUSTRATIVE DATASET

Source: GenomQC demo cohort

Generated in this browser

OVERALL STATUS WARN

REVIEW GATE

Hold before downstream analysis

One or more samples cross a FAIL boundary and require qualified review.

100% metric coverage 1 sample in review queue

KEY FINDINGS

    RECOMMENDED ACTIONS

      Sample Decision Reads Q30 GC Dup. Adapter Primary reason

      DECISION TRACE

      Samples requiring attention

      Every flag stays connected to its observed value, decision and recommended next action.

      DECISION POLICY · DEFAULT RNA-SEQ PROFILE

      Visible rules. No black box.

      These screening thresholds are transparent starting points. Validate them against the assay, organism, library preparation, platform and laboratory SOP.

      03 · HOW IT WORKS

      A defensible decision,
      not another wall of plots.

      GenomQC combines common RNA-seq quality signals in one decision layer. Rules stay visible; the report supports prioritization and qualified review.

      01

      Import

      Read MultiQC general statistics from JSON, TSV or CSV.

      02

      Evaluate

      Evaluate read count, Q30, GC, duplication, adapter and retention signals.

      03

      Decide

      Produce a status, primary reason and practical next action for each sample.

      04 · REAL-REPORT VALIDATION

      Join the
      10-Report Challenge.

      We are comparing GenomQC's review queue with qualified human review on 10 real, non-sensitive MultiQC exports. Participants receive a complimentary compatibility and QC-triage summary.

      01DescribeShare the MultiQC version, export type and approximate sample count.
      02ValidateWe compare metric recognition and the generated review queue.
      03ReceiveGet a concise compatibility and QC-triage summary at no cost.
      Apply for one of 10 checks

      Start with metadata only. Participation does not require a purchase or permission to publish your results. Do not email raw reads, patient information, credentials or confidential research content.

      05 · ACCESS

      Start with the free report.
      Upgrade when your lab needs more.

      The browser report is free. GenomQC Pro is a downloadable offline workspace with configurable thresholds, reusable profiles and branded decision reports.

      PUBLIC BETA

      $0

      • Local analysis in your browser
      • PASS / WARN / FAIL summary
      • JSON and printable report
      Try it now
      FOUNDER LAB PROGRAM

      PRO · FOUNDER LAB LICENSE

      $19 USD · one-time / up to 5 users

      • Custom thresholds and reusable profiles
      • Lab-branded PDF, JSON and CSV output
      • English / Turkish reports and v1.x updates
      Buy Pro View full product details → Secure Lemon Squeezy checkout with automatic ZIP delivery after payment. One-time $19 USD.

      LAB SETUP · DONE WITH YOU

      $49 USD · one-time technical setup

      • GenomQC Pro Founder Lab License included
      • One custom profile built from your documented SOP
      • Lab identity, export check and 7-day setup support
      Request lab setup Technical configuration only. Your qualified team supplies and approves the scientific thresholds.
      For research use.

      This tool is not designed for clinical diagnosis, treatment or patient management. Every result requires appropriately qualified review.